=======================
 peaks2sparky.awk 
=======================
#!/usr/bin/gawk -f
#
#   peaks2sparky name1.seq name2.prot name3.peaks  
#
#@  create sparky readable peaklists (.list)
#@  example: peaks2sparky.awk protein.seq protein.prot c13-cycle7.peaks
#
# conversions:
#   methyl QB - MB
#
# command-line options
#   translate=sparky|no|""
#       sparky  : convert xeasy->sparky nomenclature
#       no      : no conversion at all nomenclature
#       ""      : just conversion of aromatic C[DE]1 -> CQ[DE]
#
#   flipch2s    : if you insist on flipping the methylene proton names.
#
#   shortform=1 : print V100HN-CA-N instead if V100HN-V100CA-V100N
#
#   it is better to do nomenclature changes using the translate.cya macro.
#